Publications & Conferences

As an early-career researcher, I have been fortunate to have had my work featured in different journals and conferences. Here are some of the places my work has been published, and some of the conferences where I've spoken. For a list of my software projects, please visit the Projects page.

Full publication list

Google Scholar

All publications

View my complete publication history and citation metrics on Google Scholar.

Selected work

BioContextAI is a community hub for agentic biomedical systems

Nature Biotechnology, 2025

A community for biomedical MCP server development.

Pathology-oriented multiplexing enables integrative disease mapping

Nature, 2025

Multiplexed protein imaging & subcellular computational analysis.

Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python

Bioinformatics, 2024

pytximport is a Python package for efficient (gene-)count estimation from transcript quantification files produced by pseudoalignment/quasi-mapping tools.

Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens

Nature Nanotechnology, 2023

Super-resolution microscopy with a wide-field microscopy using tissue expansion and the SRRF algorithm.

Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues

Nature Protocols, 2025

Protocol for the application of expansion and super-resolution microscopy.

Nanoscale imaging of biological systems via expansion and super-resolution microscopy

Applied Physics Reviews, 2025

Review of the application of expansion and super-resolution microscopy to biological specimens.